Upload results --

Received from Xuejun Liu at 0535 on 050615:

• dilution.csv: 5336707 bytes

• hgu95.csv: 5281883 bytes

• hgu133.csv: 6720281 bytes

Method: modified gamma Model for Oligonucleotide Signal + Global scaling normalisation / mgMOS_gs

URL: http://www.cs.man.ac.uk/~liux/puma/

Assessment results --

• Comparison report based on HGU95 SPIKE-IN and DILUTION studies [pdf]

• Simple assessment based on HGU95 SPIKE-IN and DILUTION studies [pdf]

• Complete assessment based on HGU95 SPIKE-IN data [pdf]

• Complete assessment based on HGU133 SPIKE-IN data [pdf]

• Results (with table1 score coordinate):
  1. [1] 0.2057318
  2. [2] 0.9628834
  3. [3] 0.8781136
  4. [ ] 360
  5. [ ] 47
  6. [4] 0.8024208
  7. [5] 0.7630124
  8. [6] 0.8151296
  9. [ ] 0.3194823
  10. [ ] 0.3703424
  11. [ ] 0.4302605
  12. [7] 0.5652988
  13. [8] 1061.296
  14. [9] 13.11728
  15. [10] 1.370475
  16. [11] 0.7491185
  17. [12] 0.895303
  18. [ ] 0.06351461
  19. [ ] 0.06389509
  20. [ ] 0.06421703
  21. [13] 0.07182638
  22. [14] 1028.607
  23. [15] 4.142857
  24. [ ] 12626
  25. [ ] 12626

• Results2 (with table2 score coordinate):
  1. [5] 0.7630124
  2. [4] 0.8151296
  3. [ ] 0.3194823
  4. [ ] 0.3703424
  5. [ ] 0.4302605
  6. [ ] 0.5652988
  7. [ ] 1061.296
  8. [ ] 13.11728
  9. [ ] 1.370475
  10. [9] 0.7491185
  11. [10] 0.895303
  12. [ ] 0.06351461
  13. [ ] 0.06389509
  14. [ ] 0.06421703
  15. [ ] 0.07182638
  16. [ ] 1028.607
  17. [ ] 4.142857
  18. [2] 0.5472861
  19. [ ] 1.834583
  20. [3] 2.862026
  21. [11] 0.01802290
  22. [12] 0
  23. [13] 0
  24. [14] 0.01351717
  25. [ ] 0.2262130
  26. [1] 0.356786
  27. [ ] 0.4673638
  28. [ ] 0.9110672
  29. [6] 0.8255868
  30. [7] 0.8607095
  31. [8] 0.4342021
  32. [ ] 0.2541347
  33. [ ] 0.4470274
  34. [ ] 0.2595441
  35. [ ] 0.904773
  36. [ ] 0.7343833
  37. [ ] 0.8070234
  38. [ ] 0.9415414
  39. [ ] 0.9830066
  40. [ ] 0.9248157
  41. [ ] 0.8386825
  42. [ ] 0.8259726
  43. [ ] 0.7228891
  44. [ ] 0.6034641
  45. [ ] 0.5106294
  46. [ ] 0.3413896
  47. [ ] 0.2895177
  48. [ ] 12626

• Results2-133 (with table2 score coordinate):
  1. [5] 0.813996
  2. [4] 0.9159262
  3. [ ] 0.2936181
  4. [ ] 0.3668237
  5. [ ] 0.4364514
  6. [ ] 0.6147054
  7. [ ] 847.5128
  8. [ ] 35.99267
  9. [ ] 1.200650
  10. [9] 0.8130096
  11. [10] 0.6806705
  12. [ ] 0.07352172
  13. [ ] 0.07804233
  14. [ ] 0.08636328
  15. [ ] 0.1107224
  16. [ ] 711.9524
  17. [ ] 13.90476
  18. [2] 0.3354693
  19. [ ] 1.327509
  20. [3] 2.019431
  21. [11] 0.07917649
  22. [12] 0.006816753
  23. [13] 0
  24. [14] 0.06101839
  25. [ ] 0.1054024
  26. [1] 0.2369653
  27. [ ] 0.3718302
  28. [ ] 0.6482017
  29. [6] 0.7042665
  30. [7] 0.7511085
  31. [8] 0.7685563
  32. [ ] 0.4057102
  33. [ ] 0.5692805
  34. [ ] 0.6628915
  35. [ ] 0.354782
  36. [ ] 0.4718629
  37. [ ] 0.4865166
  38. [ ] 0.8219491
  39. [ ] 1.086771
  40. [ ] 0.9169097
  41. [ ] 0.772326
  42. [ ] 0.6843226
  43. [ ] 0.8189389
  44. [ ] 0.8975764
  45. [ ] 0.9868189
  46. [ ] 0.7859442
  47. [ ] 0.5271099
  48. [ ] 22155

• Log of assessment R-script [txt]